IL_4A2I_058

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_058 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1244

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4A2I|1|A|C|1259
4A2I|1|A|G|1260
4A2I|1|A|A|1261
4A2I|1|A|C|1262
4A2I|1|A|C|1263
*
4A2I|1|A|G|1272
4A2I|1|A|C|1273
4A2I|1|A|A|1274
4A2I|1|A|A|1275
4A2I|1|A|G|1276

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14