IL_4A2I_062

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_062 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.1269

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4A2I|1|A|G|1405
4A2I|1|A|U|1406
4A2I|1|A|C|1407
*
4A2I|1|A|G|1494
4A2I|1|A|U|1495
4A2I|1|A|C|1496

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain V

PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA