IL_4ADV_020

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4ADV|1|A|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ADV_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1702

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4ADV|1|A|U|409
4ADV|1|A|G|410
4ADV|1|A|A|411
4ADV|1|A|A|412
4ADV|1|A|G|413
4ADV|1|A|A|414
4ADV|1|A|A|415
4ADV|1|A|G|416
*
4ADV|1|A|U|427
4ADV|1|A|G|428
4ADV|1|A|U|429
4ADV|1|A|A|430
4ADV|1|A|A|431
4ADV|1|A|A|432
4ADV|1|A|G|433

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4