IL_4ADV_026

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

AAG*CU

Length

5 nucleotides

Bulged bases

4ADV|1|A|A|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ADV_026 not in the Motif Atlas

Geometric match to IL_5FJC_001

Geometric discrepancy: 0.2659

The information below is about IL_5FJC_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4ADV|1|A|A|460
4ADV|1|A|A|461
4ADV|1|A|G|462
*
4ADV|1|A|C|470
4ADV|1|A|U|471

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains