3D structure

PDB id
4ADV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4ADV_027 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.0922
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

4ADV|1|A|C|504
4ADV|1|A|G|505
4ADV|1|A|G|506
4ADV|1|A|C|507
4ADV|1|A|U|508
4ADV|1|A|A|509
4ADV|1|A|A|510
4ADV|1|A|C|511
*
4ADV|1|A|G|540
4ADV|1|A|G|541

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain D
30S RIBOSOMAL PROTEIN S4
Chain L
30S RIBOSOMAL PROTEIN S12

Coloring options:


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