3D structure

PDB id
4ADV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4ADV_034 not in the Motif Atlas
Homologous match to IL_5J7L_031
Geometric discrepancy: 0.0963
The information below is about IL_5J7L_031
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4ADV|1|A|G|654
4ADV|1|A|A|655
*
4ADV|1|A|U|751
4ADV|1|A|G|752
4ADV|1|A|A|753
4ADV|1|A|C|754

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain H
30S RIBOSOMAL PROTEIN S8
Chain O
30S RIBOSOMAL PROTEIN S15

Coloring options:


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