IL_4ADV_040

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ADV_040 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0692

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4ADV|1|A|C|779
4ADV|1|A|A|780
4ADV|1|A|A|781
4ADV|1|A|A|782
4ADV|1|A|C|783
*
4ADV|1|A|G|799
4ADV|1|A|G|800
4ADV|1|A|U|801
4ADV|1|A|A|802
4ADV|1|A|G|803

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11

Chain U

30S RIBOSOMAL PROTEIN S21

Chain V

RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE A