3D structure

PDB id
4ADV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4ADV_053 not in the Motif Atlas
Geometric match to IL_5J7L_053
Geometric discrepancy: 0.1227
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4ADV|1|A|C|1158
4ADV|1|A|U|1159
4ADV|1|A|G|1160
4ADV|1|A|C|1161
*
4ADV|1|A|G|1175
4ADV|1|A|A|1176
4ADV|1|A|G|1177
4ADV|1|A|G|1178
4ADV|1|A|A|1179
4ADV|1|A|A|1180
4ADV|1|A|G|1181

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain B
30S RIBOSOMAL PROTEIN S2
Chain I
30S RIBOSOMAL PROTEIN S9

Coloring options:


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