IL_4AQY_021
3D structure
- PDB id
- 4AQY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome-apramycin complexes
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4AQY|1|A|A|532, 4AQY|1|A|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4AQY_021 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.3825
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4AQY|1|A|G|515
4AQY|1|A|U|516
4AQY|1|A|G|517
4AQY|1|A|C|518
4AQY|1|A|C|519
4AQY|1|A|A|520
4AQY|1|A|G|521
*
4AQY|1|A|C|528
4AQY|1|A|G|529
4AQY|1|A|G|530
4AQY|1|A|U|531
4AQY|1|A|A|532
4AQY|1|A|A|533
4AQY|1|A|U|534
4AQY|1|A|A|535
4AQY|1|A|C|536
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain D
- 30S RIBOSOMAL PROTEIN S4
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain W
- 5'-R(*UP*UP*CP*AP*AP*AP)-3'
- Chain Z
- 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'
Coloring options: