IL_4AQY_041

3D structure

PDB id

4AQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome-apramycin complexes

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGGG*CCCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4AQY_041 not in the Motif Atlas

Geometric match to IL_7KJT_002

Geometric discrepancy: 0.3181

The information below is about IL_7KJT_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4AQY|1|A|A|1001
4AQY|1|A|G|1001|||A
4AQY|1|A|G|1002
4AQY|1|A|G|1003
*
4AQY|1|A|C|1037
4AQY|1|A|C|1038
4AQY|1|A|C|1039
4AQY|1|A|U|1040

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains