3D structure

PDB id
4B3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 30S ribosome in complex with compound 1
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4B3M_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0529
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_84044.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

4B3M|1|A|G|887
4B3M|1|A|G|888
4B3M|1|A|A|889
4B3M|1|A|G|890
4B3M|1|A|U|891
4B3M|1|A|A|892
4B3M|1|A|C|893
4B3M|1|A|G|894
*
4B3M|1|A|U|905
4B3M|1|A|G|906
4B3M|1|A|A|907
4B3M|1|A|A|908
4B3M|1|A|A|909
4B3M|1|A|C|910

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain L
30S RIBOSOMAL PROTEIN S12

Coloring options:


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