IL_4B3S_054

3D structure

PDB id

4B3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosome in complex with compound 37

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4B3S_054 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1096

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4B3S|1|A|G|1401
4B3S|1|A|C|1402
4B3S|1|A|C|1403
4B3S|1|A|C|1404
*
4B3S|1|A|G|1497
4B3S|1|A|U|1498
4B3S|1|A|A|1499
4B3S|1|A|A|1500
4B3S|1|A|C|1501

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain W

5'-R(*UP*UP*CP*AP*AP*AP)-3'