IL_4B5R_006

3D structure

PDB id

4B5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-I riboswitch bearing the H. marismortui K-t-7

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGAG*CGAAGAAC

Length

13 nucleotides

Bulged bases

4B5R|1|A|A|34||||7_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4B5R_006 not in the Motif Atlas

Geometric match to IL_5FJC_002

Geometric discrepancy: 0.0843

The information below is about IL_5FJC_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4B5R|1|A|G|17||||7_555
4B5R|1|A|G|18||||7_555
4B5R|1|A|G|19||||7_555
4B5R|1|A|A|20||||7_555
4B5R|1|A|G|21||||7_555
*
4B5R|1|A|C|31||||7_555
4B5R|1|A|G|32||||7_555
4B5R|1|A|A|33||||7_555
4B5R|1|A|A|34||||7_555
4B5R|1|A|G|35||||7_555
4B5R|1|A|A|36||||7_555
4B5R|1|A|A|37||||7_555
4B5R|1|A|C|38||||7_555

Current chains

Chain A

SAM-I RIBOSWITCH

Nearby chains