IL_4BPP_078

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGGAUA*UUGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58261.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4BPP|1|A|G|1512
4BPP|1|A|G|1513
4BPP|1|A|G|1514
4BPP|1|A|A|1515
4BPP|1|A|U|1516
4BPP|1|A|A|1517
*
4BPP|1|A|U|1538
4BPP|1|A|U|1539
4BPP|1|A|G|1540
4BPP|1|A|A|1541
4BPP|1|A|A|1542
4BPP|1|A|C|1543

Current chains

Chain A

18S RRNA

Nearby chains

Chain G

40S RIBOSOMAL PROTEIN RPS5E

Chain M

40S RIBOSOMAL PROTEIN RPS18E

Chain T

40S RIBOSOMAL PROTEIN RPS19E