Motif IL_58261.2 Version IL_58261.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-11	3-9	3-10	4-8	4-9	4-10	5-8	6-7
1	IL_1FJG_053	1FJG	0.2676	A	SSU rRNA	A	1329	U	1330	G	1331	A	1332	A	1333	G	1334	*	C	1303	G	1304	G	1305	A	1306	U	1307	U	1308	cWW	cwW		tSH		tHS		tHS	cWW
2	IL_2AW7_059	2AW7	0.2840	A	16S ribosomal RNA	A	1329	U	1330	G	1331	A	1332	A	1333	G	1334	*	C	1303	G	1304	G	1305	A	1306	U	1307	U	1308	cWW	cwW		tSH		ntHS		tHS	cWW
3	IL_4BPP_078	4BPP	0.2477	A	18S RRNA	U	1538	U	1539	G	1540	A	1541	A	1542	C	1543	*	G	1512	G	1513	G	1514	A	1515	U	1516	A	1517	cWW	cwW		tSH		ntHS		tHS	cWW
4	IL_3J7A_068	3J7A	0.2787	A	SSU rRNA	U	1863	U	1864	G	1865	A	1866	A	1867	C	1868	*	G	1837	G	1838	G	1839	A	1840	U	1841	A	1842	cWW	cwW		ntSH		ntHS		tHS	cWW
5	IL_3U5F_079	3U5F	0.2728	6	18S rRNA	U	1566	U	1567	C	1568	A	1569	A	1570	C	1571	*	G	1540	G	1541	G	1542	A	1543	U	1544	A	1545	cWW	cwW				tHS		tHS	cWW
6	IL_4CUV_031	4CUV	0.1351	1	25S RRNA	C	758	U	759	G	760	A	761	U	762	G	763	*	C	768	G	769	G	770	A	771	U	772	G	773	cWW	ncwW		tSH		ntHS		ntHS	cWW
7	IL_3U5H_027	3U5H	0.0000	5	25S rRNA	C	758	U	759	G	760	A	761	U	762	G	763	*	C	768	G	769	G	770	A	771	U	772	G	773	cWW	cwW		tSH		ntHS		tHS	cWW
8	IL_4CUX_093	4CUX	0.4174	2	18S RRNA	G	1718	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682	C	1683						ntHS		tHS	cWW
9	IL_1VX6_007	1VX6	0.7230	A	28S ribosomal RNA	G	130	U	131	U	132	U	133	G	134	G	135	*	C	142	C	143	U	144	U	145	U	146	C	147	ncWW	ncwW					ncWw	ncWW	cWW
10	IL_3U5H_127	3U5H	0.8215	5	25S rRNA	G	3284	C	3285	G	3286	U	3287	G	3288	G	3289	*	C	3161	C	3162	A	3163	C	3164	A	3165	C	3166	ncWW	cWWa		cWW		cWW			ncWW
11	IL_4CUV_132	4CUV	0.8746	1	25S RRNA	C	3161	C	3162	A	3163	C	3164	A	3165	C	3166	*	G	3284	C	3285	G	3286	U	3287	G	3288	G	3289	cWW	ncWW						cWW	cWW
12	IL_4W23_051	4W23	0.8448	2	18S ribosomal RNA	C	1098	G	1099	A	1100	U	1101	G	1102	C	1103	*	G	1129	G	1130	G	1131	C	1132	A	1133	G	1134			ncWW						cWW
13	IL_4W21_047	4W21	0.8869	5	28S ribosomal RNA	C	1172	G	1173	G	1174	A	1175	C	1176	U	1177	*	A	1184	G	1185	U	1186	G	1187	C	1188	G	1189	cWW				ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGAAG*CGGAUU	2
UUGAAC*GGGAUA	2
CUGAUG*CGGAUG	2
UUCAAC*GGGAUA	1
AGGAUC*GAGAAU	1
GUUUGG*CCUUUC	1
GCGUGG*CCACAC	1
CCACAC*GCGUGG	1
CGAUGC*GGGCAG	1
CGGACU*AGUGCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAA*GGAU	4
UGAU*GGAU	2
UCAA*GGAU	1
GGAU*AGAA	1
UUUG*CUUU	1
CGUG*CACA	1
CACA*CGUG	1
GAUG*GGCA	1
GGAC*GUGC	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_58261.2	Only in the parent motif
IL_58261.1 Compare	IL_4CUX_093, IL_4CUV_031, IL_2AW7_059, IL_3U5F_079, IL_4BPP_078, IL_3U5H_027, IL_1FJG_053, IL_1VX6_007, IL_3U5H_127, IL_4CUV_132, IL_3J7A_068	IL_4W21_047, IL_4W23_051	IL_1VWW_007, IL_4A1B_037, IL_1VWW_141

Children motifs

This motif has no children motifs.

Annotations: (13)
Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
Heat map statistics: Min 0.12 | Avg 0.56 | Max 1.00

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