IL_4BTS_084

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAA*UAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_084 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1115

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4BTS|1|AA|U|1640
4BTS|1|AA|G|1641
4BTS|1|AA|A|1642
4BTS|1|AA|A|1643
*
4BTS|1|AA|U|1682
4BTS|1|AA|A|1683
4BTS|1|AA|A|1684
4BTS|1|AA|A|1685

Current chains

Chain AA

18S ribosomal RNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AY

40S RIBOSOMAL PROTEIN S6