IL_4BTS_110

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_110 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1395

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4BTS|1|BA|C|435
4BTS|1|BA|C|436
4BTS|1|BA|A|437
4BTS|1|BA|A|438
4BTS|1|BA|U|439
*
4BTS|1|BA|A|452
4BTS|1|BA|G|453

Current chains

Chain BA

18S ribosomal RNA

Nearby chains

Chain BD

40S RIBOSOMAL PROTEIN RPS9E

Chain BP

40S RIBOSOMAL PROTEIN S24

Chain BW

40S RIBOSOMAL PROTEIN RPS4E