3D structure

PDB id
4BTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
AGGGCAAG*CU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4BTS_117 not in the Motif Atlas
Geometric match to IL_4V88_413
Geometric discrepancy: 0.0838
The information below is about IL_4V88_413
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.1
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
10

Unit IDs

4BTS|1|BA|A|543
4BTS|1|BA|G|544
4BTS|1|BA|G|545
4BTS|1|BA|G|546
4BTS|1|BA|C|547
4BTS|1|BA|A|548
4BTS|1|BA|A|549
4BTS|1|BA|G|550
*
4BTS|1|BA|C|581
4BTS|1|BA|U|582

Current chains

Chain BA
18S ribosomal RNA

Nearby chains

Chain BD
40S RIBOSOMAL PROTEIN RPS9E
Chain BE
40S RIBOSOMAL PROTEIN RPS2E
Chain BX
40S RIBOSOMAL PROTEIN RPS30E

Coloring options:


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