IL_4BTS_138

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_138 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4BTS|1|BA|G|1083
4BTS|1|BA|A|1084
4BTS|1|BA|A|1085
4BTS|1|BA|G|1086
4BTS|1|BA|U|1087
4BTS|1|BA|A|1088
4BTS|1|BA|U|1089
4BTS|1|BA|G|1090
*
4BTS|1|BA|U|1102
4BTS|1|BA|G|1103
4BTS|1|BA|A|1104
4BTS|1|BA|A|1105
4BTS|1|BA|A|1106
4BTS|1|BA|C|1107

Current chains

Chain BA

18S ribosomal RNA

Nearby chains

Chain BL

40S RIBOSOMAL PROTEIN S12