IL_4BTS_186

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4BTS|1|CA|U|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_186 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.107

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4BTS|1|CA|G|137
4BTS|1|CA|G|138
4BTS|1|CA|A|139
4BTS|1|CA|U|140
4BTS|1|CA|A|141
4BTS|1|CA|A|142
4BTS|1|CA|C|143
*
4BTS|1|CA|G|159
4BTS|1|CA|C|160
4BTS|1|CA|U|161
4BTS|1|CA|A|162
4BTS|1|CA|A|163
4BTS|1|CA|U|164
4BTS|1|CA|A|165
4BTS|1|CA|C|166

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain CP

40S RIBOSOMAL PROTEIN S24

Chain CY

40S RIBOSOMAL PROTEIN S6