IL_4BTS_202

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

4BTS|1|CA|A|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_202 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.3619

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4BTS|1|CA|G|507
4BTS|1|CA|A|508
4BTS|1|CA|G|509
*
4BTS|1|CA|C|529
4BTS|1|CA|G|530
4BTS|1|CA|A|531
4BTS|1|CA|G|532
4BTS|1|CA|G|533
4BTS|1|CA|A|534
4BTS|1|CA|A|535
4BTS|1|CA|C|536

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain B9

40S RIBOSOMAL PROTEIN RPS31E

Chain CD

40S RIBOSOMAL PROTEIN RPS9E

Chain CX

40S RIBOSOMAL PROTEIN RPS30E