IL_4BTS_246
3D structure
- PDB id
- 4BTS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4BTS_246 not in the Motif Atlas
- Homologous match to IL_4V88_458
- Geometric discrepancy: 0.1135
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
4BTS|1|CA|C|1359
4BTS|1|CA|U|1360
4BTS|1|CA|A|1361
*
4BTS|1|CA|U|1378
4BTS|1|CA|G|1379
4BTS|1|CA|G|1380
4BTS|1|CA|A|1381
4BTS|1|CA|A|1382
4BTS|1|CA|G|1383
Current chains
- Chain CA
- 18S ribosomal RNA
Nearby chains
- Chain CG
- 40S RIBOSOMAL PROTEIN RPS5E
- Chain CI
- 40S RIBOSOMAL PROTEIN RPS16E
- Chain CR
- 40S RIBOSOMAL PROTEIN RACK1
- Chain CV
- 40S RIBOSOMAL PROTEIN RPS17E
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