IL_4CSU_006
3D structure
- PDB id
- 4CSU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with ObgE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4CSU_006 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1204
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4CSU|1|A|C|71
4CSU|1|A|G|72
4CSU|1|A|A|73
4CSU|1|A|U|74
4CSU|1|A|G|75
4CSU|1|A|G|76
4CSU|1|A|U|77
4CSU|1|A|A|78
4CSU|1|A|G|79
*
4CSU|1|A|C|97
4CSU|1|A|G|98
4CSU|1|A|A|99
4CSU|1|A|G|100
4CSU|1|A|A|101
4CSU|1|A|G|102
4CSU|1|A|U|103
4CSU|1|A|A|104
4CSU|1|A|G|105
Current chains
- Chain A
- 5S RRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S RIBOSOMAL PROTEIN L16
- Chain W
- 50S RIBOSOMAL PROTEIN L25
Coloring options: