IL_4CSU_025

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGU,ACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_025 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2262

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4CSU|1|B|G|681
4CSU|1|B|G|682
4CSU|1|B|U|683
*
4CSU|1|B|A|794
4CSU|1|B|C|795
4CSU|1|B|C|796

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

50S RIBOSOMAL PROTEIN L34

Chain E

50S RIBOSOMAL PROTEIN L4