IL_4CSU_038

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4CSU|1|B|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_038 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.3003

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4CSU|1|B|C|994
4CSU|1|B|C|995
4CSU|1|B|A|996
*
4CSU|1|B|U|1159
4CSU|1|B|G|1160

Current chains

Chain B

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L30

Chain J

50S RIBOSOMAL PROTEIN L13

Chain Q

50S RIBOSOMAL PROTEIN L20

Chain R

50S RIBOSOMAL PROTEIN L21