IL_4CSU_040

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_040 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.1852

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4CSU|1|B|U|1004
4CSU|1|B|C|1005
4CSU|1|B|C|1006
4CSU|1|B|C|1007
4CSU|1|B|A|1008
4CSU|1|B|A|1009
4CSU|1|B|A|1010
4CSU|1|B|G|1011
*
4CSU|1|B|C|1150
4CSU|1|B|A|1151

Current chains

Chain B

23S RRNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L13

Chain Q

50S RIBOSOMAL PROTEIN L20