IL_4CSU_042

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_042 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.2455

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4CSU|1|B|U|1018
4CSU|1|B|U|1019
4CSU|1|B|A|1020
4CSU|1|B|A|1021
4CSU|1|B|G|1022
4CSU|1|B|U|1023
4CSU|1|B|G|1024
*
4CSU|1|B|C|1140
4CSU|1|B|U|1141
4CSU|1|B|A|1142
4CSU|1|B|A|1143
4CSU|1|B|A|1144

Current chains

Chain B

23S RRNA

Nearby chains

Chain 8

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L6

Chain J

50S RIBOSOMAL PROTEIN L13