IL_4CSU_044

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4CSU|1|B|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_044 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.155

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4CSU|1|B|G|1031
4CSU|1|B|A|1032
4CSU|1|B|U|1033
4CSU|1|B|G|1034
*
4CSU|1|B|C|1121
4CSU|1|B|G|1122
4CSU|1|B|C|1123

Current chains

Chain B

23S RRNA

Nearby chains

Chain 8

50S RIBOSOMAL PROTEIN L36

Chain M

50S RIBOSOMAL PROTEIN L16