IL_4CSU_097

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_097 not in the Motif Atlas

Homologous match to IL_7A0S_082

Geometric discrepancy: 0.2224

The information below is about IL_7A0S_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4CSU|1|B|U|2401
4CSU|1|B|U|2402
4CSU|1|B|C|2403
*
4CSU|1|B|G|2414
4CSU|1|B|G|2415

Current chains

Chain B

23S RRNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L33

Chain 7

50S RIBOSOMAL PROTEIN L35

Chain L

50S RIBOSOMAL PROTEIN L15