IL_4CSU_101

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_101 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.3788

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4CSU|1|B|A|2459
4CSU|1|B|U|2460
4CSU|1|B|A|2461
*
4CSU|1|B|U|2489
4CSU|1|B|G|2490
4CSU|1|B|U|2491
4CSU|1|B|U|2492
4CSU|1|B|U|2493

Current chains

Chain B

23S RRNA

Nearby chains

Chain 9

GTPASE OBGE/CGTA

Chain M

50S RIBOSOMAL PROTEIN L16