IL_4CSU_102

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_102 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1912

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4CSU|1|B|C|2466
4CSU|1|B|C|2467
4CSU|1|B|A|2468
4CSU|1|B|A|2469
4CSU|1|B|G|2470
*
4CSU|1|B|C|2480
4CSU|1|B|G|2481
4CSU|1|B|A|2482
4CSU|1|B|C|2483
4CSU|1|B|G|2484

Current chains

Chain B

23S RRNA

Nearby chains

Chain 8

50S RIBOSOMAL PROTEIN L36

Chain 9

GTPASE OBGE/CGTA

Chain M

50S RIBOSOMAL PROTEIN L16