IL_4CSU_104

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4CSU|1|B|G|2576, 4CSU|1|B|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_104 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.1893

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4CSU|1|B|C|2510
4CSU|1|B|U|2511
4CSU|1|B|C|2512
*
4CSU|1|B|G|2574
4CSU|1|B|C|2575
4CSU|1|B|G|2576
4CSU|1|B|A|2577
4CSU|1|B|G|2578

Current chains

Chain B

23S RRNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L32

Chain 9

GTPASE OBGE/CGTA

Chain D

50S RIBOSOMAL PROTEIN L3