IL_4CSU_122

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

4CSU|1|B|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_122 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.2563

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4CSU|1|B|G|1666
4CSU|1|B|G|1667
4CSU|1|B|A|1668
4CSU|1|B|A|1669
4CSU|1|B|C|1670
4CSU|1|B|U|1671
4CSU|1|B|A|1672
4CSU|1|B|G|1673
4CSU|1|B|G|1674
*
4CSU|1|B|C|1990
4CSU|1|B|U|1991
4CSU|1|B|G|1992
4CSU|1|B|U|1993
4CSU|1|B|C|1994

Current chains

Chain B

23S RRNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14