IL_4CXE_005

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUCAGUAA*UGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_005 not in the Motif Atlas

Geometric match to IL_8P9A_235

Geometric discrepancy: 0.2617

The information below is about IL_8P9A_235

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_53348.1

Basepair signature

cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4CXE|1|2|C|81
4CXE|1|2|U|82
4CXE|1|2|C|83
4CXE|1|2|A|84
4CXE|1|2|G|85
4CXE|1|2|U|86
4CXE|1|2|A|87
4CXE|1|2|A|88
*
4CXE|1|2|U|96
4CXE|1|2|G|97
4CXE|1|2|A|98
4CXE|1|2|A|99
4CXE|1|2|C|100
4CXE|1|2|A|101
4CXE|1|2|G|102

Current chains

Chain 2

28S RRNA

Nearby chains