IL_4CXE_058

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GCGAAG*UGGAGGU

Length

13 nucleotides

Bulged bases

4CXE|1|2|G|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_058 not in the Motif Atlas

Geometric match to IL_8CRE_465

Geometric discrepancy: 0.2908

The information below is about IL_8CRE_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4CXE|1|2|G|1529
4CXE|1|2|C|1530
4CXE|1|2|G|1531
4CXE|1|2|A|1532
4CXE|1|2|A|1533
4CXE|1|2|G|1534
*
4CXE|1|2|U|1551
4CXE|1|2|G|1552
4CXE|1|2|G|1553
4CXE|1|2|A|1554
4CXE|1|2|G|1555
4CXE|1|2|G|1556
4CXE|1|2|U|1557

Current chains

Chain 2

28S RRNA

Nearby chains