IL_4CXE_061

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

4CXE|1|2|G|1604, 4CXE|1|2|A|1616, 4CXE|1|2|A|1617, 4CXE|1|2|U|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_061 not in the Motif Atlas

Geometric match to IL_8P9A_261

Geometric discrepancy: 0.204

The information below is about IL_8P9A_261

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

4CXE|1|2|G|1603
4CXE|1|2|G|1604
4CXE|1|2|G|1605
*
4CXE|1|2|U|1615
4CXE|1|2|A|1616
4CXE|1|2|A|1617
4CXE|1|2|U|1618
4CXE|1|2|C|1619

Current chains

Chain 2

28S RRNA

Nearby chains