IL_4CXE_082

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUCAUCAG*CUGGAG

Length

14 nucleotides

Bulged bases

4CXE|1|2|U|1908, 4CXE|1|2|C|1909, 4CXE|1|2|G|2033, 4CXE|1|2|A|2035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_082 not in the Motif Atlas

Geometric match to IL_8CRE_054

Geometric discrepancy: 0.2531

The information below is about IL_8CRE_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77278.1

Basepair signature

cWW-tWW-L-tWW-cWW-L

Number of instances in this motif group

2

Unit IDs

4CXE|1|2|C|1904
4CXE|1|2|U|1905
4CXE|1|2|C|1906
4CXE|1|2|A|1907
4CXE|1|2|U|1908
4CXE|1|2|C|1909
4CXE|1|2|A|1910
4CXE|1|2|G|1911
*
4CXE|1|2|C|2031
4CXE|1|2|U|2032
4CXE|1|2|G|2033
4CXE|1|2|G|2034
4CXE|1|2|A|2035
4CXE|1|2|G|2036

Current chains

Chain 2

28S RRNA

Nearby chains