IL_4CXE_083

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

4CXE|1|2|C|1913, 4CXE|1|2|A|2019, 4CXE|1|2|A|2020, 4CXE|1|2|A|2021, 4CXE|1|2|U|2022, 4CXE|1|2|G|2023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_083 not in the Motif Atlas

Geometric match to IL_8P9A_280

Geometric discrepancy: 0.2411

The information below is about IL_8P9A_280

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34501.2

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4CXE|1|2|G|1911
4CXE|1|2|A|1912
4CXE|1|2|C|1913
4CXE|1|2|C|1914
4CXE|1|2|C|1915
4CXE|1|2|C|1916
4CXE|1|2|A|1917
4CXE|1|2|G|1918
4CXE|1|2|A|1919
4CXE|1|2|A|1920
4CXE|1|2|A|1921
4CXE|1|2|A|1922
*
4CXE|1|2|U|2016
4CXE|1|2|G|2017
4CXE|1|2|A|2018
4CXE|1|2|A|2019
4CXE|1|2|A|2020
4CXE|1|2|A|2021
4CXE|1|2|U|2022
4CXE|1|2|G|2023
4CXE|1|2|G|2024
4CXE|1|2|A|2025
4CXE|1|2|U|2026
4CXE|1|2|G|2027
4CXE|1|2|G|2028
4CXE|1|2|C|2029
4CXE|1|2|G|2030
4CXE|1|2|C|2031

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA