IL_4CXE_094

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

4CXE|1|2|A|2405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_094 not in the Motif Atlas

Geometric match to IL_8P9A_290

Geometric discrepancy: 0.2289

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

4CXE|1|2|U|2392
4CXE|1|2|G|2393
4CXE|1|2|A|2394
4CXE|1|2|A|2395
4CXE|1|2|C|2396
*
4CXE|1|2|G|2404
4CXE|1|2|A|2405
4CXE|1|2|A|2406

Current chains

Chain 2

28S RRNA

Nearby chains