IL_4CXE_102

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_102 not in the Motif Atlas

Geometric match to IL_8P9A_295

Geometric discrepancy: 0.2082

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

4CXE|1|2|C|2566
4CXE|1|2|G|2567
4CXE|1|2|A|2568
4CXE|1|2|U|2569
4CXE|1|2|C|2570
*
4CXE|1|2|G|2729
4CXE|1|2|G|2730
4CXE|1|2|G|2731
4CXE|1|2|A|2732
4CXE|1|2|G|2733

Current chains

Chain 2

28S RRNA

Nearby chains