IL_4CXE_105

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

4CXE|1|2|A|2702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_105 not in the Motif Atlas

Geometric match to IL_4L8H_001

Geometric discrepancy: 0.369

The information below is about IL_4L8H_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

4CXE|1|2|C|2590
4CXE|1|2|C|2591
*
4CXE|1|2|G|2701
4CXE|1|2|A|2702
4CXE|1|2|G|2703

Current chains

Chain 2

28S RRNA

Nearby chains