IL_4CXE_115

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_115 not in the Motif Atlas

Geometric match to IL_8CRE_081

Geometric discrepancy: 0.1716

The information below is about IL_8CRE_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4CXE|1|2|G|2824
4CXE|1|2|G|2825
4CXE|1|2|A|2826
4CXE|1|2|A|2827
*
4CXE|1|2|U|3809
4CXE|1|2|C|3810

Current chains

Chain 2

28S RRNA

Nearby chains