IL_4CXE_117

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4CXE|1|2|U|2857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_117 not in the Motif Atlas

Geometric match to IL_9DFE_068

Geometric discrepancy: 0.1456

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4CXE|1|2|C|2844
4CXE|1|2|G|2845
4CXE|1|2|U|2846
4CXE|1|2|A|2847
4CXE|1|2|A|2848
4CXE|1|2|C|2849
*
4CXE|1|2|G|2854
4CXE|1|2|G|2855
4CXE|1|2|A|2856
4CXE|1|2|U|2857
4CXE|1|2|A|2858
4CXE|1|2|A|2859
4CXE|1|2|G|2860

Current chains

Chain 2

28S RRNA

Nearby chains