IL_4CXE_121

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

4CXE|1|2|A|3632, 4CXE|1|2|U|3648, 4CXE|1|2|C|3652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_121 not in the Motif Atlas

Geometric match to IL_8P9A_311

Geometric discrepancy: 0.1829

The information below is about IL_8P9A_311

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.2

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

5

Unit IDs

4CXE|1|2|C|3629
4CXE|1|2|G|3630
4CXE|1|2|A|3631
4CXE|1|2|A|3632
4CXE|1|2|G|3633
4CXE|1|2|G|3634
*
4CXE|1|2|U|3646
4CXE|1|2|G|3647
4CXE|1|2|U|3648
4CXE|1|2|U|3649
4CXE|1|2|G|3650
4CXE|1|2|A|3651
4CXE|1|2|C|3652
4CXE|1|2|G|3653

Current chains

Chain 2

28S RRNA

Nearby chains