IL_4CXE_122

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

4CXE|1|2|C|3670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_122 not in the Motif Atlas

Geometric match to IL_8P9A_312

Geometric discrepancy: 0.1949

The information below is about IL_8P9A_312

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4CXE|1|2|C|3669
4CXE|1|2|C|3670
4CXE|1|2|A|3671
4CXE|1|2|G|3672
*
4CXE|1|2|C|3718
4CXE|1|2|G|3719

Current chains

Chain 2

28S RRNA

Nearby chains