IL_4CXE_123

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4CXE|1|2|A|3715, 4CXE|1|2|A|3716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_123 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1997

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4CXE|1|2|U|3673
4CXE|1|2|G|3674
*
4CXE|1|2|U|3714
4CXE|1|2|A|3715
4CXE|1|2|A|3716
4CXE|1|2|A|3717

Current chains

Chain 2

28S RRNA

Nearby chains