IL_4CXE_126

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_126 not in the Motif Atlas

Geometric match to IL_8P9A_316

Geometric discrepancy: 0.2293

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4CXE|1|2|U|3684
4CXE|1|2|C|3685
4CXE|1|2|A|3686
4CXE|1|2|A|3687
4CXE|1|2|A|3688
4CXE|1|2|G|3689
4CXE|1|2|U|3690
*
4CXE|1|2|A|3701
4CXE|1|2|A|3702
4CXE|1|2|U|3703
4CXE|1|2|G|3704
4CXE|1|2|A|3705
4CXE|1|2|A|3706
4CXE|1|2|G|3707

Current chains

Chain 2

28S RRNA

Nearby chains