IL_4CXE_131

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4CXE|1|2|A|3754, 4CXE|1|2|C|3758, 4CXE|1|2|U|3759, 4CXE|1|2|C|3760, 4CXE|1|2|C|3779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_131 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.3278

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4CXE|1|2|C|3750
4CXE|1|2|C|3751
4CXE|1|2|A|3752
4CXE|1|2|A|3753
4CXE|1|2|A|3754
4CXE|1|2|U|3755
4CXE|1|2|G|3756
4CXE|1|2|C|3757
4CXE|1|2|C|3758
4CXE|1|2|U|3759
4CXE|1|2|C|3760
4CXE|1|2|G|3761
*
4CXE|1|2|C|3777
4CXE|1|2|G|3778
4CXE|1|2|C|3779
4CXE|1|2|G|3780

Current chains

Chain 2

28S RRNA

Nearby chains