IL_4CXE_149

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

4CXE|1|2|C|4309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_149 not in the Motif Atlas

Geometric match to IL_8P9A_328

Geometric discrepancy: 0.1913

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

4CXE|1|2|G|4307
4CXE|1|2|A|4308
4CXE|1|2|C|4309
4CXE|1|2|C|4310
*
4CXE|1|2|G|4324
4CXE|1|2|C|4325

Current chains

Chain 2

28S RRNA

Nearby chains