IL_4CXE_153

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

4CXE|1|2|U|4397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_153 not in the Motif Atlas

Geometric match to IL_8CRE_113

Geometric discrepancy: 0.1791

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4CXE|1|2|G|4365
4CXE|1|2|U|4366
4CXE|1|2|G|4367
*
4CXE|1|2|U|4395
4CXE|1|2|U|4396
4CXE|1|2|U|4397
4CXE|1|2|U|4398
4CXE|1|2|U|4399

Current chains

Chain 2

28S RRNA

Nearby chains